Showing : random effects • reset
2
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Nested Random Effect in LIMMA: Is It Possible?
limma rna-seq edger random effects
updated 4.4 years ago by 50k • written 4.4 years ago by • 0
10
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5
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2.5k
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limma-voom duplicateCorrelation once or twice, difference?
limma-voom duplicatecorrelation random effects
updated 5.5 years ago by 50k • written 5.5 years ago by ▴ 90
1
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4
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2.0k
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limma: comparison of repeat measurements - blocking or within-subject correlation?
limma repeated measurements blocking random effects
updated 4.2 years ago by 50k • written 4.2 years ago by ▴ 10
1
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4
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2.8k
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Remove batch effect using individuals as random in the model in Limma
batch effect Coeficents non estimable block random effects limma design matrix
updated 6.5 years ago by ★ 28k • written 6.5 years ago by ▴ 10
0
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3
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885
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Is it allowed to fit two models to make between and within subjects comparisons separately?
rnaseq limma edger deseq2 random effects
5.3 years ago tcalvo ▴ 90
12
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3.5k
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How does edgeR compare to lme4?
rna-seq edger mixed model random effects lme4
updated 7.9 years ago by 50k • written 7.9 years ago by ▴ 80
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Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
deseq2 random effects batch effects RNA-seq rna-seq
updated 6.8 years ago by 42k • written 6.8 years ago by • 0
0
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1.2k
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random effects + interaction term + limma
random effects interaction limma rna-seq
5.0 years ago flippy23 • 0
8 results • Page 1 of 1
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results by ATpoint ★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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